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  1. VIVO
  2. VIVO-1016

A Cornell instance runs out of memory on startup.

    Details

    • Type: Bug
    • Status: Resolved (View Workflow)
    • Priority: Blocker
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: v1.8
    • Component/s: None
    • Labels:
      None
    • Attachments:
      0
    • Comments:
      1

      Description

      Jim,

      Here's the trace from the log for that three-tier, VIVO Cornell issue.

      Tim

      2015-04-08 12:02:38,183 INFO [RDFFilesLoader] Loading rdf/auth/everytime/permission_config.n3
      2015-04-08 12:03:45,669 ERROR [StartupManager] edu.cornell.mannlib.vitro.webapp.servlet.setup.ContentModelSetup@63302640 Threw unexpected error
      java.lang.OutOfMemoryError: Java heap space
      at java.util.Arrays.copyOf(Arrays.java:2271)
      at java.io.ByteArrayOutputStream.grow(ByteArrayOutputStream.java:113)
      at java.io.ByteArrayOutputStream.ensureCapacity(ByteArrayOutputStream.java:93)
      at java.io.ByteArrayOutputStream.write(ByteArrayOutputStream.java:140)
      at sun.nio.cs.StreamEncoder.writeBytes(StreamEncoder.java:221)
      at sun.nio.cs.StreamEncoder.implWrite(StreamEncoder.java:282)
      at sun.nio.cs.StreamEncoder.write(StreamEncoder.java:125)
      at java.io.OutputStreamWriter.write(OutputStreamWriter.java:207)
      at java.io.BufferedWriter.flushBuffer(BufferedWriter.java:129)
      at java.io.BufferedWriter.write(BufferedWriter.java:143)
      at org.apache.jena.atlas.io.IndentedWriter.write$(IndentedWriter.java:165)
      at org.apache.jena.atlas.io.IndentedWriter.printOneChar(IndentedWriter.java:160)
      at org.apache.jena.atlas.io.IndentedWriter.print(IndentedWriter.java:100)
      at com.hp.hpl.jena.sparql.resultset.JSONOutputResultSet.printResource(JSONOutputResultSet.java:241)
      at com.hp.hpl.jena.sparql.resultset.JSONOutputResultSet.binding(JSONOutputResultSet.java:170)
      at com.hp.hpl.jena.sparql.resultset.ResultSetApply.apply(ResultSetApply.java:49)
      at com.hp.hpl.jena.sparql.resultset.JSONOutput.format(JSONOutput.java:36)
      at com.hp.hpl.jena.query.ResultSetFormatter.outputAsJSON(ResultSetFormatter.java:597)
      at edu.cornell.mannlib.vitro.webapp.rdfservice.impl.jena.RDFServiceJena.sparqlSelectQuery(RDFServiceJena.java:461)
      at edu.cornell.mannlib.vitro.webapp.rdfservice.impl.logging.LoggingRDFService.sparqlSelectQuery(LoggingRDFService.java:59)
      at edu.cornell.mannlib.vitro.webapp.dao.jena.RDFServiceGraph.execSelect(RDFServiceGraph.java:400)
      at edu.cornell.mannlib.vitro.webapp.dao.jena.RDFServiceGraph.find(RDFServiceGraph.java:257)
      at edu.cornell.mannlib.vitro.webapp.dao.jena.RDFServiceGraph.find(RDFServiceGraph.java:189)
      at com.hp.hpl.jena.graph.compose.MultiUnion.singleGraphFind(MultiUnion.java:151)
      at com.hp.hpl.jena.graph.compose.MultiUnion.graphBaseFind(MultiUnion.java:142)
      at com.hp.hpl.jena.graph.impl.GraphBase.find(GraphBase.java:268)
      at com.hp.hpl.jena.graph.GraphUtil.findAll(GraphUtil.java:128)
      at com.hp.hpl.jena.graph.impl.GraphBase.graphBaseSize(GraphBase.java:354)
      at com.hp.hpl.jena.graph.impl.GraphBase.size(GraphBase.java:344)
      at com.hp.hpl.jena.rdf.model.impl.ModelCom.size(ModelCom.java:918)
      at edu.cornell.mannlib.vitro.webapp.rdfservice.adapters.AbstractOntModelDecorator.size(AbstractOntModelDecorator.java:662)
      at edu.cornell.mannlib.vitro.webapp.servlet.setup.ContentModelSetup.setUpJenaDataSource(ContentModelSetup.java:62)

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            People

            • Assignee:
              j2blake Jim Blake
              Reporter:
              tlw72 Tim Worrall
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              Dates

              • Created:
                Updated:
                Resolved: